
About Me
I am a computational biochemist interested in metabolism and the enzymes that control this vital biological process. I have extensive background in RNA sequencing, ribosome profiling, proteomics, metabolomics, lipidomics, and metabolic tracing data processing, analysis and visualization. I am passionate about building interactive, interpretable software for a more holistic understanding of complex biological networks to elucidate regulation and mechanism.
I am an active open-source developer and contributor. I develop and maintain the following packages: Metaboverse, which aids researchers in contextualizing their metabolic data and automates the process of identifying regulatory events within their data; Electrum, which assists in visualizing and analyzing high-throughput protein metabolite interactomics data and identifying small molecule regulators of proteins; and XPRESSyourself, which adds to and automates the quantification and analysis of ribosome profiling and other gene expression data.
Most recently, I am a Senior Scientist at Pragma Bio, a small start-up leveraging clinical data and the gut microbioime to identify the small molecules responsible for health outcomes and turning those molecules into therapeutics. Previously, I was a Scientist at Altos Labs. I received my Ph.D. from the University of Utah, where I worked in the lab of Jared Rutter (Department of Biochemistry), and was co-advised by Bei Wang (School of Computing). During my Ph.D., I was funded first by an NIDDK T32, and then by an NCI F99 predoctoral fellowship (1F99CA253744). I got my start in scientific research during my undergraduate degree, where I worked in the lab of Julianne Grose isolating and then phenotypically and genomically characterizing novel Erwinia bacteriophages from apple orchards and Brevibacillus bacteriophages from honey bee.
Education
Ph.D., University of Utah
Biochemistry (emph. in Computational Biology)Advisor: Drs. Jared Rutter and Bei Wang
B.S. Brigham Young University
Molecular BiologyAdvisor: Dr. Julianne Grose
Artificial Intelligence Professional Certificate, Stanford University
Professional Experience
Senior Scientist, Pragma Bio
Scientist, Altos Labs
Awards
NCI F99 Predoctoral Fellowship
NIDDK T32 Training Grant
Outstanding Research Award, Department of Microbiology and Molecular Biology
iGem Silver Medal, iGEM World Jamboree, Boston, MA
